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Table of contents
Intro to regression
Nonlinear regression
Curve fitting with Prism
Interpreting the results
Comparing two curves
Distributions of best-fit values


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Why care?
Simulations
Dose-response example
Exp. decay example
Detailed instructions
Radioligand binding
Saturation binding
Competitive binding
Kinetics of binding
Dose-response curves
Enzyme kinetics
Standard curves
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In April 2003, GraphPad released Prism 4 and published Fitting Models to Biological Data using Linear and Nonlinear Regression. This book includes all the information that comprises curvefit.com, and much more. You can read this book as a pdf file.

Using simulations to determine the distribution of a parameters

The only way to determine the distribution of best-fit parameters is to simulate many sets of data and then look at the distribution of best-fit values following this general procedure:

1. Generate a simulated data set by adding random Gaussian error to the ideal value at each value of X.  You'll need to choose a model (equation) to simulate, the range of X values, the number of points,  and the amount of scatter.

2. Use nonlinear regression to fit a curve to the simulated data, using the same model. Record the best-fit values of the parameters.

3. Repeat steps 2-5 many (thousands) of times.

4. Construct a frequency histogram of the parameter values.

5. Repeat using a different form of the equation.

The procedure employed for generating large numbers of simulated data sets with random error is referred to as Monte Carlo analysis. Arthur Christopoulos has done this with equations commonly used in analyzing pharmacological data (Trends Pharmacol. Sci. 19:351-357, 1998), and he is a co-author of this chapter.

This procedure is explained in detail below (see How to compare parameter distributions using Prism).

Example simulation 1. Dose-response curves.


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